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Increasing anthropogenic pressures on forests, especially in the tropical regions of the world, have restricted several large mammalian species such as the Asian elephant to fragmented habitats within human-dominated landscapes. In this study, we assessed the effects of an anthropogenic landscape and its associated conflict with humans on the physiological stress responses displayed by Asian elephants in the Anamalai Hills of the Western Ghats mountains in south India. We have quantified faecal glucocorticoid metabolite (FGM) concentrations in focal individual elephants within and across herds, inhabiting both anthropogenic and natural habitats, and evaluated their physiological responses to different socio-ecological situations between November 2013 and April 2014. Physiological stress responses varied significantly among the tested elephant age- and sex categories but not across different types of social organisation. Adults generally showed higher FGM concentrations, even in the absence of stressors, than did any other age category. Males also appeared to have higher stress responses than did females. Although there was no significant variation in mean stress levels between elephants on the plateau in the absence of human interactions and those in adjacent, relatively undisturbed forest habitats, FGM concentrations increased significantly for adult and subadult individuals as well as for calves following drives, during which elephants were driven off aggressively by people. Our study emphasises the general importance of understanding individual variation in physiology and behaviour within a population of a seriously threatened mammalian species, the Asian elephant, and specifically highlights the need for long-term monitoring of the stress physiology and behavioural responses of individual elephants across both human-dominated and natural landscapes. Such studies would not only provide comprehensive insights into the adaptive biology of elephants in changing ecological regimes but also aid in the development of effective management and conservation strategies for endangered populations of the species.